DataTypes.net >> PLINK file types

PLINK

According to our registry, PLINK is capable of opening the files listed below. It is possible that PLINK can convert between the listed formats as well, the application’s manual can provide information about it.

System requirements

The precise system requirements for the PLINK application are included in the software’s manual. You can find the manual in electronic format on PLINK’s website as well. We cannot provide support for this product, so in case of a problem, turn to the developer of PLINK!

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File types

There are currently 48 file extension(s) associated to the PLINK application in our database.

.hom
PLINK Homozygosity Data
.frqx
PLINK Genotype Count Report
.gvar
PLINK Genetic Variant File
.tfam
PLINK Individual Information File
.rel
PLINK Text Relationship Matrix
.fst
PLINK Fixation Index Report
.bim
PLINK Extended MAP File
.hwe
PLINK Hardy-Weinberg Exact Test Statistic Report
.imiss
PLINK Individual-based Missing Data Report
.fam
PLINK Individual Information File
.clst
PLINK Cluster Membership File
.rlist
PLINK Rare Genotype List File
.tdt
PLINK Transmission Disequilibrium Test Report
.ped
PLINK Pedigree and Genotype Table
.grm
PLINK GCTA Text Relationship Matrix
.pphe
PLINK Phenotype Permutations Data
.tped
PLINK Transposed Text Genotype Table
.cmh
PLINK Cochran Mantel Haenszel 2x2xK Test Report
.bed
PLINK Binary Biallelic Genotype Table
.cnv
PLINK Segmental Copy Number Variant Data
.lgen
PLINK Long-format Genotype File
.list
PLINK Genotype List File
.dist
PLINK Genomic Hamming Distance Matrix
.frq
PLINK Basic Allele Frequency Report
.traw
PLINK Variant-major Additive Component File
.set
PLINK END-terminated Variant Set Membership List
.ref
PLINK Long-format Reference Allele File
.perm
PLINK Adaptive Permutation Test Report
.prob
PLINK Meta-analysis Rejected Variant List
.cmh2
PLINK Cochran Mantel Haenszel IxJxK Test Report
.adjusted
PLINK Basic Multiple-testing Corrections Data
.gen
PLINK Oxford Genotype Data
.epi
PLINK Epistatic Interaction Scan Reports Data
.het
PLINK Method-of-moments F Coefficient Estimates Data
.hh
PLINK Heterozygous Haploid Data
.homog
PLINK Homogeneity Test Report Data
.ibc
PLINK GCTA Inbreeding Coefficient Report Data
.lasso
PLINK LASSO Data
.mdist
PLINK Genomic Distance Proportion Matrix Data
.mds
PLINK Multidimensional Scaling Report Data
.meta
PLINK Meta-analysis Data
.mibs
PLINK Identity-by-state Matrix Data
.mperm
PLINK Max Permutation Test Report Data
.nearest
PLINK Nearest Neighbor Distance Report Data
.qassoc
PLINK Quantitative Trait Association Test Report Data
.qfam
PLINK Quantitative Trait Association Report Data
.raw
PLINK Additive and Dominant Component Data
.simfreq
PLINK Simulation Parameter Data

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